As I sifted through a basket of crisp, fragrant apples, a comforting memory washed over me—gathering around the table with loved ones, awaiting a warm dessert that felt like a hug in a cupcake. That’s exactly what these Apple Crumble Cupcakes embody! Infused with the flavors of fall and topped with a delightful crunchy crumble, they bring a slice of seasonal joy to your kitchen. You’ll find not only a perfect treat for cozy afternoons but also a recipe that can easily accommodate gluten-free and vegan lifestyles. Whether you’re hosting a gathering or simply indulging yourself, these cupcakes will make your taste buds dance with delight. Ready to take a trip down memory lane with me and whip up a batch?

Why Make Apple Crumble Cupcakes?
Fall Flavors: These cupcakes capture the warmth of autumn with sweet apples and aromatic spices, making them perfect for cozy gatherings.
Easy Adaptations: Whether you’re gluten-free or vegan, this recipe adapts beautifully; just swap in a few simple ingredients.
Crowd-Pleaser: Their delightful texture, combining soft cake and crunchy crumble, ensures that everyone will enjoy them, from kids to adults.
Quick Prep: With a straightforward process, you can have these delicious treats ready in just under an hour, leaving you more time to relax.
Versatile Serving: Enjoy them as a snack or dress them up with a drizzle of caramel for a dessert worthy of any occasion. Don’t forget to check out my delicious Lemon Oatmeal Crumble for more cozy baking inspiration!
Apple Crumble Cupcake Ingredients
• Create a perfect batch of Apple Crumble Cupcakes with these essential ingredients!
For the Crumble Topping
- All-purpose flour – Provides texture; substitute with gluten-free flour blend for a gluten-free option.
- Light brown sugar – Adds sweetness and richness; swap with coconut sugar for lower glycemic impact.
- Ground cinnamon – Introduces warm flavor; pumpkin pie spice can be used for a festive twist.
- Ground nutmeg – Enhances overall flavor; feel free to omit if not on hand.
- Cold unsalted butter – Essential for a crumbly texture; vegan butter works for a dairy-free version.
For the Apple Filling
- Apples (Honeycrisp, Gala, or Fuji) – Provide sweetness and moisture; tart apples like Granny Smith can balance the sweetness.
- Granulated sugar – Sweetens the filling; reduce for a less sugary taste.
- Lemon juice – Brightens the flavor and prevents browning; vinegar can be an alternative.
For the Cupcake Batter
- All-purpose flour (for batter) – Provides the cake structure; gluten-free flour blend is an option for those avoiding gluten.
- Baking powder – Acts as the leavening agent; make sure it’s fresh for the best rise.
- Baking soda – Enhances rise and browning; can be omitted if unavailable.
- Salt – Enhances sweetness and balances flavors; essential in desserts too.
- Unsalted butter (softened) – Adds richness; substitute with vegetable oil if preferred.
- Granulated sugar (for batter) – Sweetens the cupcake; use less for a healthier version.
- Eggs – Bind the ingredients; replace with egg replacer for a vegan option.
- Vanilla extract – Gives a sweet, aromatic flavor; almond extract can provide a unique touch.
- Sour cream or plain yogurt – Adds moisture; dairy-free yogurt is perfect for vegan adaptations.
- Milk – Helps achieve the right batter consistency; plant-based milk works wonderfully as a substitute.
Optional Garnishes
- Caramel sauce – A sweet drizzle to elevate your treat; chocolate sauce is a delightful alternative.
- Powdered sugar – Perfect for dusting on top for an elegant finish; can be skipped if preferred.
Step‑by‑Step Instructions for Apple Crumble Cupcakes
Step 1: Prepare Crumble Topping
In a medium bowl, whisk together the all-purpose flour, light brown sugar, ground cinnamon, and nutmeg until well combined. Next, cut in the cold unsalted butter using a pastry cutter or your fingers until the mixture resembles coarse crumbs. Cover and refrigerate the crumble topping for 15 minutes, allowing it to firm up while you prepare the other components for the Apple Crumble Cupcakes.
Step 2: Make Apple Filling
Chop your apples into small, bite-sized pieces and place them into a mixing bowl. Add granulated sugar, lemon juice, ground cinnamon, and a little flour, tossing everything together until the apples are evenly coated. This mixture not only sweetens the apples but also ensures they don’t brown before baking. Set your apple filling aside to let the flavors meld while you work on the cupcake batter.
Step 3: Prepare Cupcake Batter
Preheat your oven to 350°F (175°C) and line a muffin tin with cupcake liners. In a large mixing bowl, combine the all-purpose flour, baking powder, baking soda, and salt using a whisk. This will help to evenly distribute the leavening agents for the Apple Crumble Cupcakes. Next, set this dry mixture aside as you move on to creaming the wet ingredients.
Step 4: Cream Butter and Sugar
In a separate large bowl, cream the softened unsalted butter with granulated sugar until the mixture is fluffy and pale, which should take about 3-5 minutes. Beat in the eggs one at a time, along with the vanilla extract, ensuring each addition is fully incorporated. The result should be a smooth, creamy batter that brings warmth and sweetness to your Apple Crumble Cupcakes.
Step 5: Combine Batter Ingredients
Gradually add the dry flour mixture to the creamed mixture, alternating with the sour cream and milk, mixing just until combined. Be careful not to overmix, as this can make the cupcakes dense. The batter should be thick but pourable and full of flavor. Once combined, it’s time to assemble your cupcakes with the delightful apple filling and crumble topping.
Step 6: Assemble and Bake
Spoon the batter evenly into the prepared cupcake liners, filling each about two-thirds full. Add a generous spoonful of apple filling on top of each batter-filled liner, ensuring it is evenly distributed. Finish by sprinkling the chilled crumble topping over each cupcake. Bake in the preheated oven for 20-25 minutes or until the centers spring back when lightly touched or a toothpick inserted comes out clean.
Step 7: Garnish and Serve
Allow your Apple Crumble Cupcakes to cool in the pan for about 10 minutes before transferring them to a wire rack to cool completely. Once cooled, feel free to drizzle caramel sauce over the top or dust with powdered sugar for an added touch. These cupcakes make the perfect sweet treat for any fall gathering or cozy evening at home!

What to Serve with Apple Crumble Cupcakes?
Pairing your Apple Crumble Cupcakes with the perfect sides elevates your dessert experience to new heights!
- Vanilla Ice Cream: A classic combination; the creamy ice cream contrasts beautifully with the warm, spiced cupcake.
- Hot Spiced Cider: This aromatic beverage harmonizes wonderfully with the fall flavors, offering cozy warmth and comfort.
- Caramel Sauce Drizzle: A sweet finishing touch that enhances the cupcake’s rich flavors, making each bite even more indulgent.
- Chai Tea: The fragrant spices of chai complement the cupcake’s cinnamon and nutmeg, creating a festive harmony.
- Roasted Apples: Serve alongside roasted apple slices seasoned with cinnamon; they mirror the flavors inside the cupcakes.
- Nutty Granola: A crunchy granola on the side adds texture and echoes the crumbly topping, making each bite delightful.
- Pecan Pie Bars: For a dessert spread, these bars bring a different texture while maintaining the sweet, nutty theme.
- Pumpkin Spice Latte: This beloved seasonal drink enhances the overall experience with its aromatic spices, perfect for a chilly day.
- Maple Whipped Cream: Light and fluffy, this adds a delightful sweetness that pairs perfectly with the apple’s richness.
- Carrot Cake: Another fall favorite, the moist flavors and spices in carrot cake work harmoniously with the cupcakes for a festive touch.
How to Store and Freeze Apple Crumble Cupcakes
Room Temperature: Keep the Apple Crumble Cupcakes in an airtight container at room temperature for up to 3 days for optimal freshness.
Fridge: If you want to extend their shelf life, you can refrigerate them for up to a week; just be sure to cover them properly to prevent drying out.
Freezer: For longer storage, wrap each cupcake individually in plastic wrap and place them in a freezer-safe bag; they can be frozen for up to 3 months.
Reheating: Thaw frozen cupcakes in the fridge overnight, then warm them in the microwave for a few seconds before serving to enjoy the delightful flavors again!
Make Ahead Options
These Apple Crumble Cupcakes are perfect for busy home cooks who love to meal prep! You can prepare the crumble topping and apple filling up to 24 hours in advance; simply refrigerate both separately in airtight containers to maintain their texture and flavor. When you’re ready to bake, whip up the cupcake batter as directed, fill your liners, and add the refrigerated topping and filling before baking fresh. This way, you’ll enjoy delightful, warm cupcakes with minimal effort on the day of serving. By prepping ahead, you save precious time while still delivering a treat that’s just as delicious as if made from scratch that same day!
Apple Crumble Cupcakes Variations
Feel free to make these cupcakes truly yours with delightful twists and variations that will tantalize your taste buds!
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Gluten-Free: Use a gluten-free flour blend for a light yet scrumptious treat, perfect for those sensitive to gluten. The warmth of the spices and sweet apples will still shine through beautifully!
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Vegan: Substitute the eggs with flaxseed meal or a commercial egg replacer, and swap in vegan butter for the crumble. Enjoy a cozy, plant-based delight that everyone can savor!
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Nuts for Crunch: Fold in chopped walnuts or pecans into the batter or sprinkle on top of the crumble for an added crunchy texture. They give those bites a delightful nutty richness that complements the soft apple cake.
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Extra Spice: Elevate the flavor profile by adding a pinch of ground ginger or cloves. This will introduce a lovely warmth and complexity, perfect for chilly fall evenings.
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Mini Cupcakes: Create bite-sized versions by using a mini muffin tin! These are perfect for parties or gatherings, allowing guests to enjoy them without feeling guilty.
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Frosted Delight: Swap the crumble topping for a rich cream cheese frosting for a decadent twist. The tartness of the frosting pairs beautifully with the sweet apple filling, creating an irresistible combination.
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Stuffed Apples: For an adventurous take, core small apples and fill them with the cupcake batter and crumble topping. Bake them for a stunning dessert that impresses and delights!
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Chocolate Drizzle: For chocolate lovers, drizzle melted chocolate or chocolate sauce over the cooled cupcakes. It adds an indulgent sweetness that perfectly complements the apples.
Make sure to bake a batch and share them with loved ones, or surprise them with a creative twist you dream up! And if you’re looking for more cozy baking inspiration, try my delicious Apple Snickerdoodles Deliciously and Cinnamon Apple Cake. Enjoy the warmth of the season!
Expert Tips for Apple Crumble Cupcakes
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Cold Butter Required: Using cold butter for the crumble topping ensures a beautiful, crunchy texture—never substitute with softened butter.
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Don’t Overmix: To keep your Apple Crumble Cupcakes light and fluffy, mix the batter just until incorporated; overmixing can lead to dense cupcakes.
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Cool Before Garnishing: Let the cupcakes cool completely before adding any caramel drizzle or powdered sugar; this prevents melting and keeps presentation intact.
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Store Wisely: Keep your cupcakes in an airtight container at room temperature for up to 3 days, but they’re best enjoyed fresh!
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Flavor Twist: Experiment with different spices like ginger or cloves in your apple filling for an exciting twist on the classic Apple Crumble Cupcakes flavor.

Apple Crumble Cupcakes Recipe FAQs
How do I choose the right apples for my Apple Crumble Cupcakes?
Absolutely! For the best flavor and texture, go for sweet apples like Honeycrisp, Gala, or Fuji. If you prefer a tangy balance, opt for tart apples like Granny Smith. Choose firm apples without dark spots or blemishes to ensure a juicy filling!
How should I store my Apple Crumble Cupcakes?
To keep your cupcakes fresh, store them in an airtight container at room temperature for up to 3 days. If you prefer, they can be refrigerated for up to a week; just make sure they’re covered well to prevent them from drying out.
Can I freeze Apple Crumble Cupcakes?
Yes, indeed! For freezing, wrap each cupcake individually in plastic wrap and place them in a freezer-safe bag. They can be stored in the freezer for up to 3 months. When you’re ready to enjoy one, simply thaw it in the fridge overnight and warm it in the microwave for a few seconds!
What should I do if my cupcakes become dry?
If your Apple Crumble Cupcakes turn out dry, it could be due to overmixing the batter or overbaking. To prevent this, mix your ingredients just until combined and check for doneness a couple of minutes before the suggested baking time. A toothpick inserted into the center should come out clean but not dry.
Are these cupcakes pet-friendly or safe for those with allergies?
While these Apple Crumble Cupcakes contain common allergens like eggs and dairy, they can be made vegan by substituting eggs with an egg replacer and using dairy-free yogurt and milk. However, keep all ingredients away from pets, as chocolate and certain fruits can be harmful to them.

Delicious Apple Crumble Cupcakes for Cozy Fall Days
Ingredients
Equipment
Method
- Prepare Crumble Topping: In a medium bowl, whisk together the all-purpose flour, light brown sugar, ground cinnamon, and nutmeg until well combined. Cut in the cold unsalted butter until the mixture resembles coarse crumbs. Cover and refrigerate for 15 minutes.
- Make Apple Filling: Chop the apples into small pieces, add granulated sugar, lemon juice, and a little flour, and toss until evenly coated. Set aside.
- Prepare Cupcake Batter: Preheat oven to 350°F (175°C) and line muffin tin. In a mixing bowl, combine all-purpose flour, baking powder, baking soda, and salt.
- Cream Butter and Sugar: In a separate bowl, cream softened unsalted butter with granulated sugar until fluffy. Beat in eggs one at a time and vanilla extract.
- Combine Batter Ingredients: Gradually add the dry mixture to creamed mixture, alternating with sour cream and milk until combined.
- Assemble and Bake: Fill cupcake liners, add apple filling, sprinkle crumble topping, and bake for 20-25 minutes or until a toothpick comes out clean.
- Garnish and Serve: Cool in the pan for 10 minutes, then transfer to a wire rack. Drizzle with caramel sauce or dust with powdered sugar before serving.

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