As the leaves start to change and the air turns crisp, my kitchen transforms into a cozy haven filled with the unmistakable scent of pumpkin spice. Today, I’m thrilled to share my recipe for Low-Calorie, High-Protein Pumpkin Muffins, a delightful treat that not only embraces the season but also aligns with your health goals. Packed with nutrient-rich ingredients like chia seeds and pumpkin puree, these muffins are wonderfully moist and satisfyingly dense, making them the perfect breakfast bite or guilt-free snack. Plus, they’re quick to whip up and can easily be made vegan or gluten-free to suit your dietary needs. Intrigued by how this seasonal staple can be both delicious and nutritious? Let’s dive into the heart of this recipe together!

Why are These Muffins a Must-Try?
Deliciously Moist: Featuring pumpkin puree and chia seeds, these muffins are incredibly moist and full of flavor, reminiscent of your favorite pumpkin bread.
High-Protein Boost: With plant-based protein powder, each muffin packs in 12g of protein, making it a smart choice for breakfast or an energizing snack.
Low-Calorie Delight: At around 150 calories per muffin, you can indulge without guilt—perfect for those mindful of their calorie intake.
Versatile Options: Easily switch to gluten-free oat flour or adjust the sweetness with Chewy Pumpkin Cookies or Pumpkin Smores Cookies for a twist!
Quick Prep: Whipping these up takes minimal time, so you can enjoy them fresh from the oven on busy mornings.
Perfect Pairing: These muffins are delightful with a warm cup of tea or coffee, making them an excellent choice for your next brunch or afternoon snack!
Low-Calorie, High-Protein Pumpkin Muffin Ingredients
• Get ready to enjoy cozy flavors!
For the Muffin Batter
- Pumpkin Puree – Adds natural sweetness and moisture; use unsweetened canned pumpkin for a healthier choice.
- Oat Flour – Provides a light texture; substitute with gluten-free oat flour for a gluten-free option.
- Plant-Based Protein Powder (vanilla flavor) – Boosts protein content; choose a flavor that complements pumpkin and spice flavors.
- Chia Seeds – Increases fiber and omega-3s while providing an extra protein boost.
- Baking Powder – Helps the muffins rise for that fluffy texture we all love.
- Baking Soda – When paired with baking powder, it works wonders for leavening.
- Cinnamon – Infuses warmth and delightful flavor into each bite.
- Ground Nutmeg – Enhances the seasonal taste with its aromatic notes.
- Ground Ginger – Adds a subtle spice that perfectly complements pumpkin.
- Maple Syrup – Offers natural sweetness without excess calories; a fantastic way to enhance flavor.
- Stevia or Other Low-Calorie Sweetener – Keeps the muffins low in calories; adjust to taste for your preferences.
- Plant-Based Milk or Water – Adjusts batter consistency; opt for unsweetened varieties for the best results.
Feel free to gather your ingredients, and let’s bake something magical with these Low-Calorie, High-Protein Pumpkin Muffins!
Step‑by‑Step Instructions for Low-Calorie, High-Protein Pumpkin Muffins
Step 1: Preheat Oven
Start by preheating your oven to 350°F (175°C). While it warms up, prepare your muffin tin by placing liners in each cup or generously greasing them with cooking spray. This will ensure easy release of the Low-Calorie, High-Protein Pumpkin Muffins once they are baked to perfection.
Step 2: Mix Dry Ingredients
In a large mixing bowl, combine oat flour, plant-based protein powder, chia seeds, baking powder, baking soda, cinnamon, ground nutmeg, and ground ginger. Whisk these dry ingredients until they are evenly mixed, ensuring that there are no lumps. This blend sets the foundation for the delightful flavors of your muffins.
Step 3: Mix Wet Ingredients
In a separate bowl, whisk together pumpkin puree, maple syrup, your chosen low-calorie sweetener, and plant-based milk. Continue whisking until the mixture is smooth and well combined. This creamy mix enhances the moisture of your Low-Calorie, High-Protein Pumpkin Muffins, ensuring every bite is rich and flavorful.
Step 4: Combine Mixtures
Gently fold the wet mixture into the dry ingredients, using a spatula to combine them without overmixing. Mix until just combined; small lumps are okay! Overmixing could lead to denser muffins, so stay attentive for that perfect fluffy texture we aim for in these delicious pumpkin treats.
Step 5: Fill Muffin Tin
Using a spoon or a small ice cream scoop, carefully portion the batter into the prepared muffin cups, filling each about three-quarters full. This helps the muffins rise properly and ensures they have enough room to expand while baking. Count down the minutes until the delicious aroma fills your kitchen!
Step 6: Bake
Place the muffin tin in your preheated oven and bake for 18-20 minutes. The muffins are ready when they’re lightly golden on top, and a toothpick inserted into the center comes out clean. Keep a close eye on them during the last few minutes to avoid over-baking.
Step 7: Cool
After baking, remove the muffin tin from the oven and let it cool on a wire rack for about 10 minutes. This cooling time allows the muffins to firm up slightly, making them easier to remove from the tin. Once cooled, enjoy them warm or store them for later as a tasty snack!

Make Ahead Options
These Low-Calorie, High-Protein Pumpkin Muffins are perfect for meal prep enthusiasts! You can mix the dry ingredients (oat flour, protein powder, chia seeds, and spices) and store them in an airtight container for up to 3 days. Additionally, you can whisk together the wet ingredients (pumpkin puree, maple syrup, and plant-based milk) and refrigerate them for up to 24 hours. This prep saves you precious time on busy mornings. When you’re ready to bake, simply combine the wet and dry mixtures, fill your muffin tin, and bake as directed. By prepping ahead, you’ll enjoy fresh, delicious muffins with just a little effort—ideal for fueling your day!
Low-Calorie, High-Protein Pumpkin Muffin Variations
Invite your culinary creativity to shine as you customize your pumpkin muffins with these fun twists and swaps.
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Vegan Option: Replace the egg with an extra tablespoon of chia seeds mixed with three tablespoons of water for a delightful bind. It’s a fantastic way to keep those muffins plant-based while enjoying the same rich texture!
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Gluten-Free: Use gluten-free oat flour instead of regular oat flour to cater to those with gluten sensitivities. Enjoy a delicious taste that won’t compromise the health benefits!
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Flavor Boost: Swap out the cinnamon and nutmeg for pumpkin pie spice to give your muffins an extra festive flair. Your kitchen will smell like autumn magic!
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Hearty Additions: Toss in some chopped walnuts or pecans for a satisfying crunch. These nuts not only boost your muffin’s nutritional profile but also add a delightful contrast to the soft texture.
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Chocolate Lovers: Fold in dark chocolate chips or cacao nibs for a sweeter take! The richness of chocolate will harmonize beautifully with the warmth of pumpkin spice.
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Fruit Twist: Substitute half of the pumpkin puree with applesauce for a sweet contrast and added moisture. This results in an irresistible sweetness that’s light and fluffy!
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Sweetness Variation: Use ripe bananas mashed instead of some pumpkin puree for a naturally sweetened twist. The banana will add a pleasant flavor and bring even more moisture to your muffins.
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Spicy Kick: Add a pinch of cayenne pepper or some finely grated fresh ginger for those who enjoy heat! This provides an exciting zing that pairs wonderfully with the pumpkin’s sweetness.
With these variations, you can turn each batch of Low-Calorie, High-Protein Pumpkin Muffins into something exciting and new. Whether it’s a cozy morning with coffee or an evening snack, there’s a perfect muffin awaiting you!
Expert Tips for Low-Calorie, High-Protein Pumpkin Muffins
- Avoid Overmixing: Gently fold the wet ingredients into the dry to ensure your muffins remain fluffy. Overmixing can lead to a denser texture than desired.
- Use Quality Ingredients: Choose unsweetened pumpkin puree and plant-based protein powder that complements the pumpkin flavor. This will enhance both taste and nutrition in your Low-Calorie, High-Protein Pumpkin Muffins.
- Even Portions: Use a small ice cream scoop for equal batter portions, which promotes uniform baking and consistent muffin size.
- Watch the Time: Keep an eye on the muffins during the last few minutes of baking. They can quickly go from perfectly baked to overdone!
- Cool Before Storing: Allow muffins to cool for 10 minutes before transferring them to an airtight container. This prevents sogginess and keeps them delightfully fresh.
What to Serve with Low-Calorie, High-Protein Pumpkin Muffins
Indulging in these moist muffins is just the beginning of a delightful culinary experience that can elevate your meal to new heights.
- Creamy Greek Yogurt: Adds a refreshing tartness that balances the sweetness of the muffins while providing extra protein and creaminess.
- Spiced Chai Latte: The warming spices in chai beautifully complement the seasonal flavors of pumpkin, creating a comforting beverage pairing perfect for chilly days.
- Roasted Sweet Potatoes: These can add a savory, caramelized flavor that enhances the sweetness of the muffins; plus, they’re packed with nutrition!
- Apple Cinnamon Oatmeal: This dish offers a cozy, hearty contrast in texture, with the sweetness of apples matching the muffins splendidly.
- Maple Glazed Walnuts: Tossing toasted walnuts in a bit of maple syrup creates a crunchy topping that mirrors the muffin’s flavor profile.
- Vanilla Almond Milk: A silky beverage option that softens the muffin’s spiced notes, making it a pleasant companion to these delights.
- Savory Avocado Toast: This hearty option adds a creamy, rich texture and savory flavor that pairs well with the muffins’ sweetness while keeping the meal balanced.
- Fruit Salad with Citrus Dressing: Fresh fruits with a zingy citrus dressing bring brightness and tang that contrast well with the warmth of the muffins.
- Dark Chocolate Squares: For a hint of richness, serve with dark chocolate; the slight bitterness enhances the overall flavor experience and satisfies sweet cravings.
How to Store and Freeze Low-Calorie, High-Protein Pumpkin Muffins
Room Temperature: Store your muffins in an airtight container at room temperature for up to 3 days to maintain their delightful moisture and flavor.
Fridge: If you prefer them cool or need to keep them longer, refrigerate for up to a week. Just ensure they’re well-wrapped to avoid drying out.
Freezer: For longer storage, freeze the muffins for up to 3 months. Individually wrap them in plastic wrap, then place in a freezer bag to prevent freezer burn.
Reheating: To enjoy, simply microwave each muffin for about 20-30 seconds or warm them in the oven at 350°F (175°C) for 10 minutes, bringing back that freshly baked taste to the Low-Calorie, High-Protein Pumpkin Muffins.

Low-Calorie, High-Protein Pumpkin Muffins Recipe FAQs
What is the best way to select pumpkin puree?
Absolutely! For the best flavor and quality, choose unsweetened canned pumpkin puree. Look for options with minimal ingredients—just pumpkin—on the label. If you prefer a fresh alternative, you can roast and puree your own pumpkin!
How should I store my Low-Calorie, High-Protein Pumpkin Muffins?
To keep your muffins fresh, store them in an airtight container at room temperature for up to 3 days. If you need a little longer shelf life, you can refrigerate them for up to a week. Just be sure they’re well-wrapped to prevent drying out!
Can I freeze these muffins? If so, how?
Very! For longer storage, you can freeze these muffins for up to 3 months. Individually wrap each muffin in plastic wrap, then place them into a freezer bag or an airtight container—this prevents freezer burn. When you’re ready to enjoy, microwave a muffin for about 20-30 seconds or warm it in the oven at 350°F (175°C) for about 10 minutes.
What if my muffins come out dense?
If your muffins turn out dense, make sure to check a couple of things. First, avoid overmixing the batter; mixing just until combined is key. Also, ensure your baking powder and baking soda are fresh, as expired leavening agents can impact the rise. Lastly, evenly portioning the batter can help each muffin bake consistently, resulting in a lighter texture.
Are there any dietary considerations I should keep in mind?
Definitely! These Low-Calorie, High-Protein Pumpkin Muffins can be made vegan by using plant-based milk and sweeteners. For those with gluten sensitivities, simply substitute the oat flour with gluten-free oat flour. Always double-check labels if allergies are a concern, particularly for protein powders and sweeteners!

Delicious Low-Calorie, High-Protein Pumpkin Muffins You’ll Love
Ingredients
Equipment
Method
- Preheat your oven to 350°F (175°C) and prepare your muffin tin with liners or cooking spray.
- In a large bowl, mix the oat flour, protein powder, chia seeds, baking powder, baking soda, cinnamon, ground nutmeg, and ground ginger until evenly combined.
- In another bowl, whisk together the pumpkin puree, maple syrup, sweetener, and plant-based milk until smooth.
- Fold the wet ingredients into the dry ingredients until just combined.
- Spoon the batter into the muffin tin, filling each cup about three-quarters full.
- Bake for 18-20 minutes until lightly golden and a toothpick inserted comes out clean.
- Cool the muffins on a wire rack for about 10 minutes before removing them from the tin.

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